Index

_

__init__() (segmentationmetrics.metrics.SegmentationMetrics method)

A

accuracy (segmentationmetrics.metrics.SegmentationMetrics attribute)

assert_dict_approx() (in module segmentationmetrics.tests.test_metrics)

B

ball_a (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) ball_b (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) ball_c (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute)

ball_d (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) ball_e (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) ball_f (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute)

C

canvas (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) centre_a (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) centre_b (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) centre_c (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) centre_d (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) centre_e (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) centre_f (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute)

compute_average_surface_distance() (in module segmentationmetrics.surface_distance.metrics) compute_dice_coefficient() (in module segmentationmetrics.surface_distance.metrics) compute_robust_hausdorff() (in module segmentationmetrics.surface_distance.metrics) compute_surface_dice_at_tolerance() (in module segmentationmetrics.surface_distance.metrics) compute_surface_distances() (in module segmentationmetrics.surface_distance.metrics) compute_surface_overlap_at_tolerance() (in module segmentationmetrics.surface_distance.metrics) create_table_neighbour_code_to_contour_length() (in module segmentationmetrics.surface_distance.lookup_tables) create_table_neighbour_code_to_surface_area() (in module segmentationmetrics.surface_distance.lookup_tables)

D

dice (segmentationmetrics.metrics.SegmentationMetrics attribute)

G

get_df() (segmentationmetrics.metrics.SegmentationMetrics method)

get_dict() (segmentationmetrics.metrics.SegmentationMetrics method)

H

hausdorff_distance (segmentationmetrics.metrics.SegmentationMetrics attribute)

I

img_a (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) img_b (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) img_c (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute)

img_d (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) img_e (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) img_f (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) img_shape (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute)

J

jaccard (segmentationmetrics.metrics.SegmentationMetrics attribute)

M

mean_surface_distance (segmentationmetrics.metrics.SegmentationMetrics attribute) module segmentationmetrics segmentationmetrics.metrics segmentationmetrics.surface_distance segmentationmetrics.surface_distance.lookup_tables segmentationmetrics.surface_distance.metrics segmentationmetrics.tests segmentationmetrics.tests.test_metrics segmentationmetrics.tests.test_surface_distance

P

precision (segmentationmetrics.metrics.SegmentationMetrics attribute)

predicted_volume (segmentationmetrics.metrics.SegmentationMetrics attribute)

R

radius_a (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) radius_b (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) radius_c (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute)

radius_d (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) radius_e (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute) radius_f (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics attribute)

S

segmentationmetrics module SegmentationMetrics (class in segmentationmetrics.metrics) segmentationmetrics.metrics module segmentationmetrics.surface_distance module segmentationmetrics.surface_distance.lookup_tables module segmentationmetrics.surface_distance.metrics module

segmentationmetrics.tests module segmentationmetrics.tests.test_metrics module segmentationmetrics.tests.test_surface_distance module sensitivity (segmentationmetrics.metrics.SegmentationMetrics attribute) specificity (segmentationmetrics.metrics.SegmentationMetrics attribute) SurfaceDistance2DTest (class in segmentationmetrics.tests.test_surface_distance) SurfaceDistance3DTest (class in segmentationmetrics.tests.test_surface_distance) SurfaceDistanceTest (class in segmentationmetrics.tests.test_surface_distance)

T

test_2d() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_all_wrong() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_basic_case() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_both_empty_masks() (segmentationmetrics.tests.test_surface_distance.SurfaceDistance2DTest method) (segmentationmetrics.tests.test_surface_distance.SurfaceDistance3DTest method) test_compute_surface_distances_raises_on_incompatible_shapes0() (segmentationmetrics.tests.test_surface_distance.SurfaceDistanceTest method) test_compute_surface_distances_raises_on_incompatible_shapes1() (segmentationmetrics.tests.test_surface_distance.SurfaceDistanceTest method) test_compute_surface_distances_raises_on_incompatible_shapes2() (segmentationmetrics.tests.test_surface_distance.SurfaceDistanceTest method) test_compute_surface_distances_raises_on_invalid_shapes0() (segmentationmetrics.tests.test_surface_distance.SurfaceDistanceTest method) test_compute_surface_distances_raises_on_invalid_shapes1() (segmentationmetrics.tests.test_surface_distance.SurfaceDistanceTest method) test_empty_ground_truth_mask() (segmentationmetrics.tests.test_surface_distance.SurfaceDistance2DTest method) (segmentationmetrics.tests.test_surface_distance.SurfaceDistance3DTest method) test_empty_prediction_mask() (segmentationmetrics.tests.test_surface_distance.SurfaceDistance2DTest method) (segmentationmetrics.tests.test_surface_distance.SurfaceDistance3DTest method) test_float_case() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_many_labels_error() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method)

test_multilabel_basic() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_multilabel_labels_dont_overlap() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_multilabel_missing_label() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_multilabel_with_options() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_multilabel_with_options_missing_label() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_no_labels() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_no_overlap() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_non_consecutive_labels() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_nonisotropic_voxels() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_on_2_pixels_2mm_away() (segmentationmetrics.tests.test_surface_distance.SurfaceDistance2DTest method) (segmentationmetrics.tests.test_surface_distance.SurfaceDistance3DTest method) test_options() (segmentationmetrics.tests.test_metrics.TestSegmentationMetrics method) test_two_cubes_shifted_by_one_pixel() (segmentationmetrics.tests.test_surface_distance.SurfaceDistance3DTest method) test_two_squares_shifted_by_one_pixel() (segmentationmetrics.tests.test_surface_distance.SurfaceDistance2DTest method) TestSegmentationMetrics (class in segmentationmetrics.tests.test_metrics) true_volume (segmentationmetrics.metrics.SegmentationMetrics attribute)

V

volume_difference (segmentationmetrics.metrics.SegmentationMetrics attribute)